############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/Rscript -e "source('/home/biocbuild/BBS/utils/installNonTargetPkg.R');installNonTargetPkg('BSgenome.Hsapiens.UCSC.hg38')" ### ############################################################################## ############################################################################## Installing package into ‘/home/biocbuild/bbs-3.22-bioc/R/site-library’ (as ‘lib’ is unspecified) trying URL 'https://bioconductor.org/packages/3.22/data/annotation/src/contrib/BSgenome.Hsapiens.UCSC.hg38_1.4.5.tar.gz' Content type 'application/x-gzip' length 731245539 bytes (697.4 MB) ================================================== downloaded 697.4 MB Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin(block[seq_len(min(512L, remain))], out) : problem writing to connection Warning in writeBin* installing *source* package ‘BSgenome.Hsapiens.UCSC.hg38’ ... ** this is package ‘BSgenome.Hsapiens.UCSC.hg38’ version ‘1.4.5’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location Warning in .seqlengths_TwoBitFile(x) : End of file reading 4 bytes Error: package or namespace load failed for ‘BSgenome.Hsapiens.UCSC.hg38’: .onLoad failed in loadNamespace() for 'BSgenome.Hsapiens.UCSC.hg38', details: call: h(simpleError(msg, call)) error: error in evaluating the argument 'x' in selecting a method for function 'seqlengths': UCSC library operation failed Error: loading failed Execution halted ERROR: loading failed * removing ‘/home/biocbuild/bbs-3.22-bioc/R/site-library/BSgenome.Hsapiens.UCSC.hg38’ The downloaded source packages are in ‘/tmp/RtmpHCCUvY/downloaded_packages’ Warning message: In install.packages(pkg, repos = .NON_TARGET_REPOS, dependencies = FALSE, : installation of package ‘BSgenome.Hsapiens.UCSC.hg38’ had non-zero exit status