R (>= 2.7.0), methods, stats4, BiocGenerics (>= 0.29.2),
Biobase (>= 1.17.0), IRanges
R (>= 4.0.0), methods, utils, graphics, stats, generics
R (>= 4.0.0), methods, utils, stats, BiocGenerics (>= 0.53.2),
S4Vectors (>= 0.45.4)
BiocGenerics, S4Vectors, IRanges, Biostrings (>= 2.71.5)
R (>= 4.0.0), methods, utils, stats, stats4, BiocGenerics (>=
0.53.2)
DBI, RSQLite, S4Vectors (>= 0.9.25), stats, KEGGREST
bookdown, knitr (>= 1.30), rmarkdown (>= 1.2), stats, utils,
yaml, BiocManager
methods, XML (>= 2.3-0), graph, utils, RCurl, Rgraphviz
methods, stats, httr, jsonlite, S4Vectors
methods, utils, tools, BiocGenerics, S4Vectors, IRanges
utils, hgu95av2.db, GO.db, org.Sc.sgd.db, org.At.tair.db,
RUnit, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db,
reactome.db, AnnotationForge, graph, EnsDb.Hsapiens.v75,
BiocStyle, knitr
biomaRt, httr, GenomeInfoDb (>= 1.17.1), Biostrings, affy,
hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, GO.db,
rmarkdown, BiocStyle, knitr, BiocManager, BiocFileCache, RUnit
tools, tkWidgets, ALL, RUnit, golubEsets, BiocStyle, knitr,
limma
Biobase, S4Vectors, IRanges, S4Arrays, SparseArray,
DelayedArray, HDF5Array, GenomicRanges, pwalign, Rsamtools,
AnnotationDbi, affy, affyPLM, DESeq2, flowClust, MSnbase,
annotate, MultiAssayExperiment, RUnit
GenomeInfoDbData, R.utils, data.table, GenomicRanges,
Rsamtools, GenomicAlignments, BSgenome, GenomicFeatures,
TxDb.Dmelanogaster.UCSC.dm3.ensGene,
BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
XVector, GenomicRanges, Rsamtools, GenomicAlignments,
GenomicFeatures, BSgenome.Celegans.UCSC.ce2, pasillaBamSubset,
RUnit, BiocStyle
RBGL, testthat, RColorBrewer, org.Hs.eg.db, hgu133plus2.db,
SPIA
IRanges, GenomicRanges, SummarizedExperiment, Matrix,
DelayedArray, ShortRead, graph, data.table, RUnit, BiocStyle,
knitr
DBI, RMariaDB, GenomeInfoDb, testthat, knitr, rmarkdown,
BiocStyle